Pre-tax deductions on a pay stub

Short answer

Pre-tax deductions come out of pay before some taxes are worked out, so those taxes are lower. They don't all lower the same taxes: a 401(k) deferral generally lowers federal income tax withholding but not social security or Medicare, while section 125 cafeteria-plan benefits, such as health premiums or HSA contributions through the plan, aren't wages for employment taxes at all.

Add a pre-tax 401(k) amount to see how federal income tax changes and FICA doesn't.

See a 401(k) in a paycheck

Updated September 25, 2026 · Reviewed by PayDocs, September 26, 2026

Which taxes each one lowers

Treatment under IRS Publication 15 (2026)
DeductionFederal income taxSocial security and Medicare
401(k) elective deferralLowered (generally exempt)Not lowered (taxable)
Section 125 cafeteria plan, e.g. health premiumsLowered (not wages)Lowered (not wages)
HSA contribution through a cafeteria planLowered (not wages)Lowered (not wages)
After-tax deductions, e.g. Roth 401(k), garnishmentsNot loweredNot lowered

Worked example: $100 401(k) on a $2,000 paycheck

Single, 2026 W-4, paid every two weeks. Without the 401(k), federal income tax is $156.15. With $100 deferred, federal taxable wages are $1,900 and federal income tax is $144.15 ($12 less), while social security ($124.00) and Medicare ($29.00) stay on the full $2,000.

On the pay stub

Pay stubs often show federal taxable wages separately from gross pay, which is why the two differ. Year-to-date totals should track the same split.

Questions

Do pre-tax deductions lower FICA?

It depends. Section 125 cafeteria-plan benefits do; 401(k) deferrals don't.

Is health insurance taken out before tax?

When it's paid through a section 125 cafeteria plan, yes: it isn't wages for income tax withholding, social security or Medicare.

Sources

Official sources checked September 25, 2026. This guide explains how pay documents work; it is not tax or legal advice.